- Directorate of Performance Contracting and Appraisal
- Directorate of Academic Quality Assurance
- Directorate of Information and Communication Technology
- Directorate of Extension and Technology Transfer
- Directorate of Research Services
- Directorate of Production
- Directorate of LinkagesÂ
- Directorate of Grants Management
- JKUAT TVET Directorate
- Sino-Africa Joint Research Centre
- ICT Centre of Excellence and Open Data
- Gender and Mentoring Centre
- Ombudsman’s Office
- Alumni and International Students Office
- Directorate of Intellectual Property Management and University-Industry Liaison (DIPUIL)
